Hi all,
a quick check of the context help within Checkmk states the following:
Note: When using the windows agent, all logical paths point to the same location - the agent installation dir.
I know that this is also not exactly what is happening, because the files are put into “ProgramData” and not into the same directory as check_mk_agent.exe, but let’s just say that the deployment to subdirectories is just not implemented for Windows hosts.