Can't update to 2.3.0b3

Can you keep the structure like this?

OMD[cre]:~/local/lib/python3$ find
.
./cmk
./cmk/base
./cmk/base/plugins
./cmk/base/plugins/agent_based
./cmk/special_agents
./cmk/gui
./cmk/gui/plugins
./cmk/gui/plugins/views
./cmk/gui/plugins/dashboard

Looks like enabling the MKP create a folder structure but removing the MKP doesn’t remove the folders it creates.